Short demo of an experimental analysis of metabolomic (NMR) data using Pathomx. Metabolomic test dataset produced from THP-1 cells grown under normal and hypoxic conditions. Spectra (2D 1H JRES) have been pre-processed and quantified using the BML-NMR service.
The video shows an example analysis from processed data through to metabolic pathways and PLS-DA outputs.
Pathomx is an open-source workflow-based scientific analysis application. Source code is available here with packaged binaries and paper to follow shortly. More information is available on this site.